Module: bbcflib.demultiplex

bbcflib.demultiplex.countident(seq1, seq2)[source]

Count the common letters in both sequencies

bbcflib.demultiplex.get_primersList(primersfile)[source]

Return a dictionary with all primers with at least one barcode occurrence

bbcflib.demultiplex.load_paramsFile(paramsfile)[source]

Return a dictionary with the parameters required for exonerate

bbcflib.demultiplex.prepareReport(ex, name, tot_counts, counts_primers, counts_primers_filtered, tot_ambiguous=0, tot_discarded=0)[source]
Example::
Primer Total_number_of_reads nFiltered nValidReads HoxD13 9406932 4296211 5110721 HoxD4 3835395 415503 3419892 HoxD9 6908054 594449 6313605 Discarded xxxx Ambiguous xxx Unclassified 1304048 Total 21454429

Previous topic

Module: bbcflib.genrep

Next topic

Module: bbcflib.mapseq

This Page

Websites